/*
 * This file is part of the Popitam software
 * Copyright (C) 2009 Swiss Institute of Bioinformatics
 *
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 59 Temple Place, Suite 330, 
 * Boston, MA 02111-1307, USA.
 */

#include <cstring> // strcpy()

#include "defines.h"
#include "error.h"
#include "ants.h"
#include "memorycheck.h"

using namespace std;

// ********************************************************************************************** //

extern memorycheck memCheck;

// ********************************************************************************************** //

ants::ants() 
{
  runManParam  = NULL;
  aaParam      = NULL;
}

// ********************************************************************************************** //

ants::~ants() 
{
  runManParam    =  NULL;
  aaParam        =  NULL;
}

// ********************************************************************************************** //

void ants::init(runManagerParameters* rMP, aa* aaP, char* seq, float pepMass) 
{
  runManParam    = rMP;
  aaParam        = aaP;
   
  startVertex            =  0;
  iPlace                 =  0;
  iSuffPlace             =  0;
  arcPos                 =  0;

  runnedVertexNb         = 0;
  parsedSequenceLenght   = 0;
  strcpy(parsedSequence,   "");

//  for (int i = 0; i < MAX_PEAKS; i++)  tabooTab[i] = true;

  for (int i = 0; i < MAX_LENGHT; i++) {
    runnedVertex[i].iVertex = 0;
    runnedVertex[i].iEdge   = 0;
  }

}

// ********************************************************************************************** //
